species:   Rhsol
pid:       PID0488
parent:    Rhi-milR-108
paralog:   
locus:     KB317821.1:19925-20001
matures:   ['UAGGUGUAGCACACAGCAAAGG', 'UGCUUGCAGUCUGUGCCUGGGCAGGCC']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317821.1:19925-20001

55 out of bounds
46 alignments
44 proper strand
39 stranded perfect matches

    ******************************         *************************         
GCAGGCCUGCUUGCAGUCUGUGCCUGGGCAGGCCCUAGCCAAGGGUAGGUGUAGCACACAGCAAAGGCCCCAUUGUG
...(((((..((((....(((((.((.((..(((((.....)))))..)).)))))))..)))))))))........
---------------------------------------------UAGGUGUAGCACACAGCAAAGG---------- l=22 a=1 c
-------UGCUUGCAGUCUGUGCCUGGGCAGGCC------------------------------------------- l=27 a=0 c*
---------------------------------------------UAGGUGUAGCACACAGCAAAGGC--------- l=23 a=16 ma
------CUGCUUGCAGUCUGUGCCUGGGCAGGCC------------------------------------------- l=28 a=0 ma*

-------UGCUUGCAGUCUGUGCCUGGGC------------------------------------------------ l=22 a=1 
----------UUGCAGUCUGUGCCUGGGCAGGC-------------------------------------------- l=23 a=1 
----------UUGCAGUCUGUGCCUGGGCAGGu-------------------------------------------- l=23 a=1 
-----------UGCAGUCUGUGCCUGGGCAGGC-------------------------------------------- l=22 a=2 
------------------------UGGGCAGGCCCUAGCCAAGGGUAGG---------------------------- l=25 a=1 
---------------------------------------------UAGGUGUAGCACACAGCAAAG----------- l=21 a=3 
---------------------------------------------UAGGUGUAGCACACAGCAAAGG---------- l=22 a=1 (c)
---------------------------------------------UAGGUGUAGCACACAGCAAAGGC--------- l=23 a=16 (ma)
---------------------------------------------UAGGUGUAGCACACAGCAAuGGC--------- l=23 a=1 
---------------------------------------------UAGGUGUAGCACACAGCAAAGGCC-------- l=24 a=5 
---------------------------------------------UAGGUGUAGCACACAGCAAAGGCa-------- l=24 a=1 
---------------------------------------------UAGGUGUAGCACACAGCAAAGGCCC------- l=25 a=4 
-------------------------------------------------UGUAGCACACAGCAAAGGCC-------- l=20 a=4 
-------------------------------------------------UGcAGCACACAGCAAAGGCCC------- l=21 a=1 
-------------------------------------------------UGUAGCACACAGCAAAGGCCCa------ l=22 a=1 
-------------------------------------------------UGUAGCACACAGCAAAGGCCCC------ l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101000
fn-111
